TF_ChIP-seq_ENCSR004HEA
TF_ChIP-seq ENCSR004HEA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OTX2" and target="OTX2"]
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| Id: | TF_ChIP-seq/ENCSR004HEA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR004HEA [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OTX2" and target="OTX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens OTX2 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN789OHN|/analyses/ENCAN789OHN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF346NWC|/files/ENCFF346NWC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF346NWC|/files/ENCFF346NWC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.85. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF287WKB|/files/ENCFF287WKB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF287WKB|/files/ENCFF287WKB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR004HEA | float |
TF_ChIP-seq_ENCSR004HEA |
TF_ChIP-seq ENCSR004HEA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OTX2" and target="OTX2"]
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[15.7, 939] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF200AEP.bed.gz | 93.54 KB | 5f12bb1a157457390f7e4789fe69ac01 |
| ENCFF200AEP.bed.gz.dvc | 99.0 B | 1632ab3b18ac61026009b13a98274ffa |
| ENCFF200AEP.tabix.bed.gz | 60.78 KB | 557563016ac0259ce11b8989446195f0 |
| ENCFF200AEP.tabix.bed.gz.dvc | 105.0 B | 91bda277f99617badc8dccc8a1def29a |
| ENCFF200AEP.tabix.bed.gz.tbi | 51.52 KB | a19a7af3ac51a7dffa7df81907793cf7 |
| ENCFF200AEP.tabix.bed.gz.tbi.dvc | 109.0 B | a5976ae3c3abde92ac8530403f2a8643 |
| genomic_resource.yaml | 4.24 KB | d5973a558906d2b97beea74c690b6b52 |
| genomic_resource_original.yaml | 4.07 KB | a18ea4c52cdf73ca660a1b5d99bf1969 |
| statistics/ |