TF_ChIP-seq_ENCSR004GKA
TF_ChIP-seq ENCSR004GKA [biosample_summary="Homo sapiens K562" and target="ZEB2"]
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| Id: | TF_ChIP-seq/ENCSR004GKA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR004GKA [biosamplesummary="Homo sapiens K562" and target="ZEB2"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN457WEC|/analyses/ENCAN457WEC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF167RGS|/files/ENCFF167RGS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18785518 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZEB2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF167RGS|/files/ENCFF167RGS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF167RGS|/files/ENCFF167RGS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.07. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF689KTQ|/files/ENCFF689KTQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF689KTQ|/files/ENCFF689KTQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.23. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR004GKA | float |
TF_ChIP-seq_ENCSR004GKA |
TF_ChIP-seq ENCSR004GKA [biosample_summary="Homo sapiens K562" and target="ZEB2"]
|
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[37.1, 3.47e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF076IFG.bed.gz | 419.02 KB | 2685a6bf489be07bdc3b2f2d29d997cd |
| ENCFF076IFG.bed.gz.dvc | 100.0 B | f6de586f2197f99c62dabfdbcfd81783 |
| ENCFF076IFG.tabix.bed.gz | 342.84 KB | c51d280c6ae3331bdd3eff7a005543dc |
| ENCFF076IFG.tabix.bed.gz.dvc | 106.0 B | 1e2bf13058d81a4183aeb14ec93d0dff |
| ENCFF076IFG.tabix.bed.gz.tbi | 151.78 KB | 20df65d03e3c8e858039351d8d3d7c1d |
| ENCFF076IFG.tabix.bed.gz.tbi.dvc | 110.0 B | 8ba4295ae22021eaba65f6a115761294 |
| genomic_resource.yaml | 4.43 KB | a213860dad7f79627f9cb845681d1e58 |
| genomic_resource_original.yaml | 4.33 KB | 97173bca51e72e64c231f9b86e950b5c |
| statistics/ |