TF_ChIP-seq_ENCSR003GUC
TF_ChIP-seq ENCSR003GUC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1" and target="E4F1"]
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| Id: | TF_ChIP-seq/ENCSR003GUC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR003GUC [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1" and target="E4F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens E4F1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN486FGS|/analyses/ENCAN486FGS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF706AAG|/files/ENCFF706AAG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF706AAG|/files/ENCFF706AAG/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.58. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF505GIU|/files/ENCFF505GIU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF505GIU|/files/ENCFF505GIU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.74. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF439KTZ|/files/ENCFF439KTZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 2.68. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF582AFY|/files/ENCFF582AFY/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 2.68. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR003GUC | float |
TF_ChIP-seq_ENCSR003GUC |
TF_ChIP-seq ENCSR003GUC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E4F1" and target="E4F1"]
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[23.3, 1.05e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF439KTZ.bed.gz | 41.27 KB | 4f433defe9063eaff59cc82875711fe4 |
| ENCFF439KTZ.bed.gz.dvc | 99.0 B | e33eec9f0f2e072e4901c2eda73f8b78 |
| ENCFF439KTZ.tabix.bed.gz | 27.22 KB | eee607db0a50c07971c2e21f68f421a6 |
| ENCFF439KTZ.tabix.bed.gz.dvc | 105.0 B | 26458b4dff32ddf3a4d82267ba26582e |
| ENCFF439KTZ.tabix.bed.gz.tbi | 22.84 KB | 024f832deb48c1aa2b82808302951a05 |
| ENCFF439KTZ.tabix.bed.gz.tbi.dvc | 109.0 B | bccd45d742e3a8a5d67bc5dcce6940f0 |
| genomic_resource.yaml | 5.26 KB | e9b0339a6601be47298847e961fe1ead |
| genomic_resource_original.yaml | 5.1 KB | ae63acd0af6e8063814d4856886e46e1 |
| statistics/ |