TF_ChIP-seq_ENCSR002ZGC
TF_ChIP-seq ENCSR002ZGC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF212" and target="ZNF212"]
×
| Id: | TF_ChIP-seq/ENCSR002ZGC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR002ZGC [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF212" and target="ZNF212"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF212 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN952OQH|/analyses/ENCAN952OQH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN952OQH|/analyses/ENCAN952OQH/} has in progress subobject document {ba99a8b1-cf14-474c-b034-9971eb0134c2|/documents/ba99a8b1-cf14-474c-b034-9971eb0134c2/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF903OPJ|/files/ENCFF903OPJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF903OPJ|/files/ENCFF903OPJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.61. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF920KSZ|/files/ENCFF920KSZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF920KSZ|/files/ENCFF920KSZ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.60. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR002ZGC | float |
TF_ChIP-seq_ENCSR002ZGC |
TF_ChIP-seq ENCSR002ZGC [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF212" and target="ZNF212"]
|
|
[15.7, 1.29e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF435MHH.bed.gz | 46.81 KB | 065cb67bf1f365bcaf24edf734a9a5a4 |
| ENCFF435MHH.bed.gz.dvc | 99.0 B | 769a069db19d6b97ee0e2d29ec4d5d0b |
| ENCFF435MHH.tabix.bed.gz | 30.26 KB | 84eab4e4473f72bb0647ee7bdedf135b |
| ENCFF435MHH.tabix.bed.gz.dvc | 105.0 B | 2514d63c1ffe2e5af576eaea0fa98973 |
| ENCFF435MHH.tabix.bed.gz.tbi | 25.48 KB | c53ad26a2b55914035fd389e1eb7939a |
| ENCFF435MHH.tabix.bed.gz.tbi.dvc | 109.0 B | dfee0e240b522e94a1abd7ed24c595d4 |
| genomic_resource.yaml | 4.45 KB | 7bdcf7a808dd10d44c66b34fecc8250f |
| genomic_resource_original.yaml | 4.28 KB | f38ab2f46353f450b741a930ce9f44e4 |
| statistics/ |