TF_ChIP-seq_ENCSR000FAH
TF_ChIP-seq ENCSR000FAH [biosample_summary="Homo sapiens K562" and target="JUN"]
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| Id: | TF_ChIP-seq/ENCSR000FAH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000FAH [biosamplesummary="Homo sapiens K562" and target="JUN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF809NJE|/files/ENCFF809NJE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4737466 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUN-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN028PMY|/analyses/ENCAN028PMY/} has in progress subobject document {4c2a4928-5b54-4821-9575-2d3784cb03b3|/documents/4c2a4928-5b54-4821-9575-2d3784cb03b3/} audit_internal_action: Released analysis {ENCAN028PMY|/analyses/ENCAN028PMY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF194AIS|/files/ENCFF194AIS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6278873 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUN-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF589QXC|/files/ENCFF589QXC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.19 and a self consistency ratio of 3.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000FAH | float |
TF_ChIP-seq_ENCSR000FAH |
TF_ChIP-seq ENCSR000FAH [biosample_summary="Homo sapiens K562" and target="JUN"]
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[2.16, 272] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF589QXC.bed.gz | 169.6 KB | 4ee82c51376a8d36015d7cb91d0d5c82 |
| ENCFF589QXC.bed.gz.dvc | 100.0 B | 2b31c33c6b059eb15f77ff7ef7d3b87c |
| ENCFF589QXC.tabix.bed.gz | 129.67 KB | af6ac797b9bf0d20869bada277c71c80 |
| ENCFF589QXC.tabix.bed.gz.dvc | 106.0 B | 2b1ec676bda8aec8ee8b30a8c5e44d56 |
| ENCFF589QXC.tabix.bed.gz.tbi | 89.44 KB | f109e5895866a9e1bfe6d3cd3991306a |
| ENCFF589QXC.tabix.bed.gz.tbi.dvc | 109.0 B | 6d20665e1193b9e680ff06a504162b82 |
| genomic_resource.yaml | 3.1 KB | 99ed702bfa643a803da4692a939561c2 |
| genomic_resource_original.yaml | 3.01 KB | 1408e06e8bff788f7b2e78483f1a83f0 |
| statistics/ |