type: position_score
table:
  filename: ENCFF675PHY.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000FAG
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000FAG [biosample_summary="Homo sapiens K562" and target="MYC"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000FAG [biosample_summary="Homo sapiens K562" and target="MYC"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_error**:\
    \ Processed alignments file {ENCFF937QDF|/files/ENCFF937QDF/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 3395233 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting MYC-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_error**: Processed\
    \ alignments file {ENCFF788FDI|/files/ENCFF788FDI/} processed by ChIP-seq ENCODE4\
    \ v1.6.1 GRCh38 pipeline has 3192210 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting MYC-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )\n\n**audit\\_internal\\_action**: Released\
    \ analysis {ENCAN568MZG|/analyses/ENCAN568MZG/} has in progress subobject quality\
    \ standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN568MZG|/analyses/ENCAN568MZG/} has\
    \ in progress subobject document {782d7403-b142-4d82-b451-531a426162d8|/documents/782d7403-b142-4d82-b451-531a426162d8/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF675PHY|/files/ENCFF675PHY/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.07 and a self consistency\
    \ ratio of 2.22. According to ENCODE standards, having both rescue ratio and self\
    \ consistency ratio values < 2 is recommended, but having only one of the ratio\
    \ values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000FAG
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens K562
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR000FAG
    date_created: '2013-09-13T15:56:55.696322-08:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: MYC
