TF_ChIP-seq_ENCSR000EZD
TF_ChIP-seq ENCSR000EZD [biosample_summary="Homo sapiens HeLa-S3" and target="MYC"]
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| Id: | TF_ChIP-seq/ENCSR000EZD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EZD [biosamplesummary="Homo sapiens HeLa-S3" and target="MYC"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_error: Processed alignments file {ENCFF406ZWO|/files/ENCFF406ZWO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 4174695 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MYC-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Archived analysis {ENCAN059PRX|/analyses/ENCAN059PRX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF628WKV|/files/ENCFF628WKV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6209386 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MYC-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF891KEP|/files/ENCFF891KEP/}, {ENCFF950LQM|/files/ENCFF950LQM/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 3.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF932YPQ|/files/ENCFF932YPQ/}, {ENCFF623SJG|/files/ENCFF623SJG/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 3.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EZD | float |
TF_ChIP-seq_ENCSR000EZD |
TF_ChIP-seq ENCSR000EZD [biosample_summary="Homo sapiens HeLa-S3" and target="MYC"]
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[2.2, 381] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF950LQM.bed.gz | 204.53 KB | 9c585bf7485ac45eac9214d50fa11e73 |
| ENCFF950LQM.bed.gz.dvc | 100.0 B | 505f6bd776d8928e184b154986851ebb |
| ENCFF950LQM.tabix.bed.gz | 158.69 KB | f52d726fbea343c4cf29da39cbf841b0 |
| ENCFF950LQM.tabix.bed.gz.dvc | 106.0 B | aff0d962b8a4262bfd232e976928854c |
| ENCFF950LQM.tabix.bed.gz.tbi | 92.74 KB | 05f9817eabe7836800194d0ede3f3341 |
| ENCFF950LQM.tabix.bed.gz.tbi.dvc | 109.0 B | c21a4a6f436ff3b508877a4d6314ec47 |
| genomic_resource.yaml | 3.46 KB | e3d463f10998bf2dbde4224c95254cf7 |
| genomic_resource_original.yaml | 3.37 KB | 92fd86e258a37e88eac7e16bb1d38b19 |
| statistics/ |