TF_ChIP-seq_ENCSR000EZC
TF_ChIP-seq ENCSR000EZC [biosample_summary="Homo sapiens HeLa-S3" and target="SMARCA4"]
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| Id: | TF_ChIP-seq/ENCSR000EZC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EZC [biosamplesummary="Homo sapiens HeLa-S3" and target="SMARCA4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN903WDS|/analyses/ENCAN903WDS/} has in progress subobject document {ba7e5fb8-3463-4c8a-89e8-31cb074894ed|/documents/ba7e5fb8-3463-4c8a-89e8-31cb074894ed/} audit_internal_action: Released analysis {ENCAN903WDS|/analyses/ENCAN903WDS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF557YXZ|/files/ENCFF557YXZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 5738638 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMARCA4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF335CUS|/files/ENCFF335CUS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 5779653 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMARCA4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF970BHF|/files/ENCFF970BHF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 5102105 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMARCA4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF216YDM|/files/ENCFF216YDM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 4.45 and a self consistency ratio of 4.60. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EZC | float |
TF_ChIP-seq_ENCSR000EZC |
TF_ChIP-seq ENCSR000EZC [biosample_summary="Homo sapiens HeLa-S3" and target="SMARCA4"]
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[4, 73.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF216YDM.bed.gz | 40.42 KB | e95d3faea5a6483250ac813218d16436 |
| ENCFF216YDM.bed.gz.dvc | 99.0 B | 97fb5c1834e36c7a8e68085baa4a4194 |
| ENCFF216YDM.tabix.bed.gz | 31.31 KB | fd3bde94880efbfa131aaf36099d08ae |
| ENCFF216YDM.tabix.bed.gz.dvc | 105.0 B | 81b0133193f4d7c1d42f0f75302d2968 |
| ENCFF216YDM.tabix.bed.gz.tbi | 20.4 KB | a158907c3ed3e7923b2ee2eadb09c689 |
| ENCFF216YDM.tabix.bed.gz.tbi.dvc | 109.0 B | 3b63a1ed233a0c8f8803785379e62fac |
| genomic_resource.yaml | 3.66 KB | cfce053a81234165ad108fed027d8ba3 |
| genomic_resource_original.yaml | 3.56 KB | 0809d33b65c813f2b0b7e8c8ab21185e |
| statistics/ |