type: position_score
table:
  filename: ENCFF571DGT.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EYZ
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EYZ [biosample_summary="Homo sapiens GM12878" and target="FOS"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EYZ [biosample_summary="Homo sapiens GM12878" and target="FOS"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2,\
    \ Rep 3\n\n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\\
    _error**: Processed alignments file {ENCFF139BSO|/files/ENCFF139BSO/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 1995810 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ FOS-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_error**:\
    \ Processed alignments file {ENCFF814AEX|/files/ENCFF814AEX/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 2973143 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting FOS-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_error**: Processed\
    \ alignments file {ENCFF940GUI|/files/ENCFF940GUI/} processed by ChIP-seq ENCODE4\
    \ v1.6.1 GRCh38 pipeline has 2901575 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting FOS-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )\n\n**audit\\_internal\\_action**: Released\
    \ analysis {ENCAN950YYJ|/analyses/ENCAN950YYJ/} has in progress subobject document\
    \ {706a4d18-ce66-462c-a7b4-e28dead55d36|/documents/706a4d18-ce66-462c-a7b4-e28dead55d36/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN950YYJ|/analyses/ENCAN950YYJ/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF571DGT|/files/ENCFF571DGT/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency\
    \ ratio of 5.53. According to ENCODE standards, having both rescue ratio and self\
    \ consistency ratio values < 2 is recommended, but having only one of the ratio\
    \ values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EYZ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR000EYZ
    date_created: '2013-09-13T15:56:55.499497-08:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: FOS
