TF_ChIP-seq_ENCSR000EYB
TF_ChIP-seq ENCSR000EYB [biosample_summary="Homo sapiens SH-SY5Y" and target="GATA2"]
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| Id: | TF_ChIP-seq/ENCSR000EYB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EYB [biosamplesummary="Homo sapiens SH-SY5Y" and target="GATA2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF064YWN|/files/ENCFF064YWN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN567FRG|/analyses/ENCAN567FRG/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF658RFI|/files/ENCFF658RFI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17221931 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF330EUW|/files/ENCFF330EUW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19384585 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF658RFI|/files/ENCFF658RFI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF658RFI|/files/ENCFF658RFI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.36. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EYB | float |
TF_ChIP-seq_ENCSR000EYB |
TF_ChIP-seq ENCSR000EYB [biosample_summary="Homo sapiens SH-SY5Y" and target="GATA2"]
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[6.32, 762] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF064YWN.bed.gz | 581.38 KB | 28b9dbae685d1be9848af5dddb85af58 |
| ENCFF064YWN.bed.gz.dvc | 100.0 B | 58d4c8bdebe17d061fab1e313ffc0949 |
| ENCFF064YWN.tabix.bed.gz | 447.9 KB | 5cd2c311a655279532225f52effba62f |
| ENCFF064YWN.tabix.bed.gz.dvc | 106.0 B | 750db8dc0e4d9c79a633296e14f9bdc5 |
| ENCFF064YWN.tabix.bed.gz.tbi | 222.04 KB | 4019dc3d6086686898280723a009d7d3 |
| ENCFF064YWN.tabix.bed.gz.tbi.dvc | 110.0 B | ce3fa06a8778a8aa6480a8680cb36cd0 |
| genomic_resource.yaml | 3.83 KB | ce5b55e3409621704987fdd1c890982a |
| genomic_resource_original.yaml | 3.73 KB | 68aa558fccde065ed82fbf8a8a2b6676 |
| statistics/ |