TF_ChIP-seq_ENCSR000EXO
TF_ChIP-seq ENCSR000EXO [biosample_summary="Homo sapiens erythroblast male" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000EXO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EXO [biosamplesummary="Homo sapiens erythroblast male" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN242PHO|/analyses/ENCAN242PHO/} has in progress subobject document {898a4fef-0c20-40f6-9e1d-ecfa3b8c120f|/documents/898a4fef-0c20-40f6-9e1d-ecfa3b8c120f/} audit_internal_action: Released analysis {ENCAN242PHO|/analyses/ENCAN242PHO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF534UTR|/files/ENCFF534UTR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF534UTR|/files/ENCFF534UTR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EXO | float |
TF_ChIP-seq_ENCSR000EXO |
TF_ChIP-seq ENCSR000EXO [biosample_summary="Homo sapiens erythroblast male" and target="POLR2A"]
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[7.35, 1.16e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF211PWC.bed.gz | 613.64 KB | b4c7ce7ff05e5fa9441ccbd3eb92993c |
| ENCFF211PWC.bed.gz.dvc | 100.0 B | 40423cf3c420002f1889e111e3c97af8 |
| ENCFF211PWC.tabix.bed.gz | 443.25 KB | e3e8b1a5c5dd5498cbbabb30130f0b97 |
| ENCFF211PWC.tabix.bed.gz.dvc | 106.0 B | cb28ad2837897dfb493a764fd8108cf0 |
| ENCFF211PWC.tabix.bed.gz.tbi | 121.01 KB | ede3b7a12ae293c23aeaeb60b40647a4 |
| ENCFF211PWC.tabix.bed.gz.tbi.dvc | 110.0 B | 6212c5c72e78cf3c4f4a1c1ae2b1c68d |
| genomic_resource.yaml | 2.85 KB | a7bc31b5327bd1182721d88275a5c64d |
| genomic_resource_original.yaml | 2.75 KB | b1c05a6bf3ab01834dc4e9d571b9d720 |
| statistics/ |