TF_ChIP-seq_ENCSR000EXL
TF_ChIP-seq ENCSR000EXL [biosample_summary="Homo sapiens Panc1" and target="TCF7L2"]
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| Id: | TF_ChIP-seq/ENCSR000EXL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EXL [biosamplesummary="Homo sapiens Panc1" and target="TCF7L2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN971LDX|/analyses/ENCAN971LDX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF171XUS|/files/ENCFF171XUS/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF613CHF|/files/ENCFF613CHF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11119207 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF7L2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF786INL|/files/ENCFF786INL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15406206 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF7L2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF786INL|/files/ENCFF786INL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF786INL|/files/ENCFF786INL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EXL | float |
TF_ChIP-seq_ENCSR000EXL |
TF_ChIP-seq ENCSR000EXL [biosample_summary="Homo sapiens Panc1" and target="TCF7L2"]
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[5.92, 1.09e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF171XUS.bed.gz | 335.75 KB | 3ae0e6fd5de7cc5d8fc9eea989958312 |
| ENCFF171XUS.bed.gz.dvc | 100.0 B | 19fd3148a9e39d7968ef12b6fb50101d |
| ENCFF171XUS.tabix.bed.gz | 274.99 KB | 1565c3e90e0c26ddf5257bf7aabdf113 |
| ENCFF171XUS.tabix.bed.gz.dvc | 106.0 B | b79bac652aa1bdf665d69274542a91c6 |
| ENCFF171XUS.tabix.bed.gz.tbi | 112.6 KB | a8c33e2c5e9e29d4386ee58dd7162c9a |
| ENCFF171XUS.tabix.bed.gz.tbi.dvc | 110.0 B | e4bce7b4b96d8ae892c8d93cf7622294 |
| genomic_resource.yaml | 3.83 KB | 6fc822a18097d9db6a731d50ab410b3c |
| genomic_resource_original.yaml | 3.73 KB | 07a75c87d4b5a6361f6c7ec3ee9892d1 |
| statistics/ |