type: position_score
table:
  filename: ENCFF352MLK.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EXG
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000EXG [TISSUE: Homo sapiens NT2/D1, TARGET: YY1]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN399SQY|/analyses/ENCAN399SQY/} has in progress\
    \ subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF921FRL|/files/ENCFF921FRL/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7647221 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ YY1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_not\\\
    _compliant**: Processed alignments file {ENCFF704CUM|/files/ENCFF704CUM/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 5563278 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ YY1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EXG
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens NT2/D1
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0005236/
    perturbed: false
    doi: 10.17989/ENCSR000EXG
    date_created: '2013-12-12T07:13:54.433357+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: YY1
