TF_ChIP-seq_ENCSR000EWY
TF_ChIP-seq ENCSR000EWY [biosample_summary="Homo sapiens NT2/D1" and target="ZNF274"]
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| Id: | TF_ChIP-seq/ENCSR000EWY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EWY [biosamplesummary="Homo sapiens NT2/D1" and target="ZNF274"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN290UCC|/analyses/ENCAN290UCC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN290UCC|/analyses/ENCAN290UCC/} has in progress subobject document {79c0b02a-b81a-4d25-9b15-fbdead21f87c|/documents/79c0b02a-b81a-4d25-9b15-fbdead21f87c/} audit_warning: Processed alignments file {ENCFF418GEI|/files/ENCFF418GEI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16223309 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF274-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF418GEI|/files/ENCFF418GEI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF418GEI|/files/ENCFF418GEI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.41. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EWY | float |
TF_ChIP-seq_ENCSR000EWY |
TF_ChIP-seq ENCSR000EWY [biosample_summary="Homo sapiens NT2/D1" and target="ZNF274"]
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[7.3, 561] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF987XFQ.bed.gz | 24.15 KB | 6d1925efc801325fd8dc3bd1e6f2aae3 |
| ENCFF987XFQ.bed.gz.dvc | 99.0 B | 1787fef13ed507e3d788abc03a0d37dd |
| ENCFF987XFQ.tabix.bed.gz | 18.4 KB | 397addaccc79441c690d7d5f749da8de |
| ENCFF987XFQ.tabix.bed.gz.dvc | 105.0 B | a864ccb87dd943fb79188b274c82a6da |
| ENCFF987XFQ.tabix.bed.gz.tbi | 14.71 KB | 2bbf20e6e916cb44b0bd24de49ab13b1 |
| ENCFF987XFQ.tabix.bed.gz.tbi.dvc | 109.0 B | 81d8e74783552d95610d77bd6a51ca0b |
| genomic_resource.yaml | 3.38 KB | 959ee714d8d1df439ec3dba30d64eb9c |
| genomic_resource_original.yaml | 3.29 KB | 7874f02d0e70d8556f4024f5cf9745a8 |
| statistics/ |