type: position_score
table:
  filename: ENCFF115KRO.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EWX
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000EWX [TISSUE: Homo sapiens MCF-7 stably expressing E2F1,
    TARGET: E2F1]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: stably expressing N-terminal HA-tagged E2F1


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN611UIP|/analyses/ENCAN611UIP/}
    has in progress subobject document {c15bf54a-76b7-4989-9a1b-e9d41c117f53|/documents/c15bf54a-76b7-4989-9a1b-e9d41c117f53/}


    **audit\_internal\_action**: Released analysis {ENCAN611UIP|/analyses/ENCAN611UIP/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_warning**: Processed alignments file {ENCFF851FBB|/files/ENCFF851FBB/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13809021 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    E2F1-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_warning**: Processed alignments file {ENCFF178AAA|/files/ENCFF178AAA/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10640139 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    E2F1-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EWX
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: stably expressing N-terminal HA-tagged E2F1
    biosample_summary: Homo sapiens MCF-7 stably expressing E2F1
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001203/
    perturbed: false
    doi: 10.17989/ENCSR000EWX
    date_created: '2013-12-12T07:13:47.171047+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: E2F1
