TF_ChIP-seq_ENCSR000EWM
TF_ChIP-seq ENCSR000EWM [biosample_summary="Homo sapiens K562" and target="GATA1"]
×
| Id: | TF_ChIP-seq/ENCSR000EWM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EWM [biosamplesummary="Homo sapiens K562" and target="GATA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_error: Processed alignments file {ENCFF642RHD|/files/ENCFF642RHD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 3672728 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Archived analysis {ENCAN088OBG|/analyses/ENCAN088OBG/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF576YJD|/files/ENCFF576YJD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_not_compliant: Processed alignments file {ENCFF788ICY|/files/ENCFF788ICY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8366432 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF266EKT|/files/ENCFF266EKT/}, {ENCFF811YFQ|/files/ENCFF811YFQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.48 and a self consistency ratio of 4.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF576YJD|/files/ENCFF576YJD/}, {ENCFF484BSF|/files/ENCFF484BSF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.48 and a self consistency ratio of 4.99. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EWM | float |
TF_ChIP-seq_ENCSR000EWM |
TF_ChIP-seq ENCSR000EWM [biosample_summary="Homo sapiens K562" and target="GATA1"]
|
|
[2.57, 227] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF576YJD.bed.gz | 69.42 KB | 0e027d8aeed6a6ee8da9d4e88cf23ab4 |
| ENCFF576YJD.bed.gz.dvc | 99.0 B | aeab76f809a1595b0e74157e71b7283f |
| ENCFF576YJD.tabix.bed.gz | 53.42 KB | 9494792952fb2f05c50bcbd989b2505f |
| ENCFF576YJD.tabix.bed.gz.dvc | 105.0 B | 905cfa7b4d4810ab8833f5c138dbfefc |
| ENCFF576YJD.tabix.bed.gz.tbi | 43.23 KB | e34cb0bc36ee9033821c93f3c98070b9 |
| ENCFF576YJD.tabix.bed.gz.tbi.dvc | 109.0 B | 78891b0b72d415924c79417a807a95e8 |
| genomic_resource.yaml | 3.82 KB | d89ac37f8534977e041d91ba613be3e6 |
| genomic_resource_original.yaml | 3.72 KB | 3d83caf20ebd8ee10a7da82f123c2bf8 |
| statistics/ |