TF_ChIP-seq_ENCSR000EWL
TF_ChIP-seq ENCSR000EWL [biosample_summary="Homo sapiens K562" and target="E2F4"]
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| Id: | TF_ChIP-seq/ENCSR000EWL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EWL [biosamplesummary="Homo sapiens K562" and target="E2F4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF161EVY|/files/ENCFF161EVY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 3283420 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN420LQF|/analyses/ENCAN420LQF/} has in progress subobject document {ac90f228-15f9-4cbc-a6f7-4e636813cb2b|/documents/ac90f228-15f9-4cbc-a6f7-4e636813cb2b/} audit_internal_action: Released analysis {ENCAN420LQF|/analyses/ENCAN420LQF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF095AMG|/files/ENCFF095AMG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6480723 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting E2F4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF064CWA|/files/ENCFF064CWA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.15 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EWL | float |
TF_ChIP-seq_ENCSR000EWL |
TF_ChIP-seq ENCSR000EWL [biosample_summary="Homo sapiens K562" and target="E2F4"]
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[2.33, 380] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF064CWA.bed.gz | 147.24 KB | d9999549e32e49b79bcf8396b1ece95d |
| ENCFF064CWA.bed.gz.dvc | 100.0 B | 8980fe9246606038e62d2b19642c826a |
| ENCFF064CWA.tabix.bed.gz | 116.1 KB | 23ec1af2976ddc84a800899cfabd6c24 |
| ENCFF064CWA.tabix.bed.gz.dvc | 106.0 B | 2ffb97033d1e27dd1de7b9ed4ecea4e8 |
| ENCFF064CWA.tabix.bed.gz.tbi | 68.39 KB | 063b28a0b038be22668da26492e78939 |
| ENCFF064CWA.tabix.bed.gz.tbi.dvc | 109.0 B | f85a79b6e764e2a49c84fc4ad4bdacc1 |
| genomic_resource.yaml | 3.33 KB | f2d683577816350513de3153951f9ee1 |
| genomic_resource_original.yaml | 3.24 KB | a2c3ac66ea0a3e51845dae4bf7a2b9b0 |
| statistics/ |