type: position_score
table:
  filename: ENCFF085GHX.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EWJ
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EWJ [biosample_summary="Homo sapiens K562" and target="E2F6"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EWJ [biosample_summary="Homo sapiens K562" and target="E2F6"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_error**:\
    \ Processed alignments file {ENCFF762JGN|/files/ENCFF762JGN/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 3662017 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting E2F6-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_error**: Processed\
    \ alignments file {ENCFF854FCI|/files/ENCFF854FCI/} processed by ChIP-seq ENCODE4\
    \ v1.6.1 GRCh38 pipeline has 4815699 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting E2F6-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )\n\n**audit\\_internal\\_action**: Released\
    \ analysis {ENCAN424LJA|/analyses/ENCAN424LJA/} has in progress subobject document\
    \ {0b041c34-5f7f-412a-b99f-59038c63beef|/documents/0b041c34-5f7f-412a-b99f-59038c63beef/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN424LJA|/analyses/ENCAN424LJA/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EWJ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens K562
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR000EWJ
    date_created: '2014-02-12T23:01:23.976782+00:00'
    date_released: '2011-10-29'
    submitter_comment: Peak calling failed for hg19, and efforts to understand the
      problem are ongoing.
    target: E2F6
