TF_ChIP-seq_ENCSR000EWG
TF_ChIP-seq ENCSR000EWG [biosample_summary="Homo sapiens K562" and target="GATA2"]
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| Id: | TF_ChIP-seq/ENCSR000EWG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EWG [biosamplesummary="Homo sapiens K562" and target="GATA2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF173TXA|/files/ENCFF173TXA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN962BJN|/analyses/ENCAN962BJN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF340JWK|/files/ENCFF340JWK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 7517769 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF779CRV|/files/ENCFF779CRV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8386347 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF440KMN|/files/ENCFF440KMN/}, {ENCFF173TXA|/files/ENCFF173TXA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.59 and a self consistency ratio of 8.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF475QTZ|/files/ENCFF475QTZ/}, {ENCFF827ENU|/files/ENCFF827ENU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.59 and a self consistency ratio of 8.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EWG | float |
TF_ChIP-seq_ENCSR000EWG |
TF_ChIP-seq ENCSR000EWG [biosample_summary="Homo sapiens K562" and target="GATA2"]
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[3.24, 393] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF173TXA.bed.gz | 180.72 KB | c395f505b604dfc3a2e6759e674e5857 |
| ENCFF173TXA.bed.gz.dvc | 100.0 B | 746d12b07e381fe11bb5da4b18f94e47 |
| ENCFF173TXA.tabix.bed.gz | 139.43 KB | b621fe186083338840c9418ecbf504ae |
| ENCFF173TXA.tabix.bed.gz.dvc | 106.0 B | 4b45a97fd00d87430cbce1ad17cfd3bb |
| ENCFF173TXA.tabix.bed.gz.tbi | 88.4 KB | 41c07a53f369488bed5cfd259cc31323 |
| ENCFF173TXA.tabix.bed.gz.tbi.dvc | 109.0 B | 75dd879a365754f74bc2a5c732eff161 |
| genomic_resource.yaml | 3.69 KB | 4ffb9fa6a7e96563da011df3ae0137c9 |
| genomic_resource_original.yaml | 3.59 KB | f5dd878b8a3879020c06965b01ee1022 |
| statistics/ |