TF_ChIP-seq_ENCSR000EVG
TF_ChIP-seq ENCSR000EVG [biosample_summary="Homo sapiens HeLa-S3" and target="ZNF274"]
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| Id: | TF_ChIP-seq/ENCSR000EVG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EVG [biosamplesummary="Homo sapiens HeLa-S3" and target="ZNF274"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN946NXA|/analyses/ENCAN946NXA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN946NXA|/analyses/ENCAN946NXA/} has in progress subobject document {f7fbd223-73cc-4986-b514-9067f54bc652|/documents/f7fbd223-73cc-4986-b514-9067f54bc652/} audit_warning: Processed alignments file {ENCFF061JYJ|/files/ENCFF061JYJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10520323 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF274-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF546RIC|/files/ENCFF546RIC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 2.27 and a self consistency ratio of 1.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EVG | float |
TF_ChIP-seq_ENCSR000EVG |
TF_ChIP-seq ENCSR000EVG [biosample_summary="Homo sapiens HeLa-S3" and target="ZNF274"]
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[9.47, 310] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF546RIC.bed.gz | 8.33 KB | d3fb7f5e4b3226a966a40f648568e0fc |
| ENCFF546RIC.bed.gz.dvc | 98.0 B | 18163558be4026a1f8133e3c0c035920 |
| ENCFF546RIC.tabix.bed.gz | 6.35 KB | 82ae84480451d07bc06c7c677c4ad4bc |
| ENCFF546RIC.tabix.bed.gz.dvc | 104.0 B | b7869eb725a5db53aeaae088755fc032 |
| ENCFF546RIC.tabix.bed.gz.tbi | 7.0 KB | 5344a82b45883586b048e9e0b7d25b63 |
| ENCFF546RIC.tabix.bed.gz.tbi.dvc | 108.0 B | 4c3a1854eff10184df04dd6dcbc0296b |
| genomic_resource.yaml | 2.61 KB | a1c949cec073879f282a058849be6812 |
| genomic_resource_original.yaml | 2.51 KB | ebde0f8eb660e7496f61b29f6996ebe8 |
| statistics/ |