TF_ChIP-seq_ENCSR000EVF
TF_ChIP-seq ENCSR000EVF [biosample_summary="Homo sapiens HeLa-S3" and target="TCF7L2"]
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| Id: | TF_ChIP-seq/ENCSR000EVF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EVF [biosamplesummary="Homo sapiens HeLa-S3" and target="TCF7L2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN761GPJ|/analyses/ENCAN761GPJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN761GPJ|/analyses/ENCAN761GPJ/} has in progress subobject document {9a21f72a-dea3-4122-a3c3-e7bef4e8f7a6|/documents/9a21f72a-dea3-4122-a3c3-e7bef4e8f7a6/} audit_not_compliant: Processed alignments file {ENCFF879PHP|/files/ENCFF879PHP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9055438 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF7L2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF795DYB|/files/ENCFF795DYB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11505181 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF7L2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF795DYB|/files/ENCFF795DYB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF795DYB|/files/ENCFF795DYB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EVF | float |
TF_ChIP-seq_ENCSR000EVF |
TF_ChIP-seq ENCSR000EVF [biosample_summary="Homo sapiens HeLa-S3" and target="TCF7L2"]
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[4.46, 705] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF207MNT.bed.gz | 75.94 KB | fdf595bb81cf135f2ee0dfaf891121ff |
| ENCFF207MNT.bed.gz.dvc | 99.0 B | f02aab806dcdf1a38900947fec996781 |
| ENCFF207MNT.tabix.bed.gz | 61.44 KB | daca5067158d1cbc0118877773c7c9c9 |
| ENCFF207MNT.tabix.bed.gz.dvc | 105.0 B | 7b64b8ed7d132987bcc1bbcd0857cc7e |
| ENCFF207MNT.tabix.bed.gz.tbi | 37.89 KB | 10f38da74b0f1c08e70665ba8e60cec8 |
| ENCFF207MNT.tabix.bed.gz.tbi.dvc | 109.0 B | 53ed272aa2ad2bf915e547b44c4f40a6 |
| genomic_resource.yaml | 3.9 KB | 669e8f8fd5a8e2ec26dc80ae830cb7b2 |
| genomic_resource_original.yaml | 3.8 KB | e9d8d6b0d10f95327e708275ae896fd6 |
| statistics/ |