TF_ChIP-seq_ENCSR000EVB
TF_ChIP-seq ENCSR000EVB [biosample_summary="Homo sapiens HEK293" and target="ELK4"]
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| Id: | TF_ChIP-seq/ENCSR000EVB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EVB [biosamplesummary="Homo sapiens HEK293" and target="ELK4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN266IUZ|/analyses/ENCAN266IUZ/} has in progress subobject document {07c5dc06-7cb6-4fa2-89e7-5ea3445bba36|/documents/07c5dc06-7cb6-4fa2-89e7-5ea3445bba36/} audit_internal_action: Released analysis {ENCAN266IUZ|/analyses/ENCAN266IUZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF644LVU|/files/ENCFF644LVU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13003487 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ELK4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF644LVU|/files/ENCFF644LVU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF644LVU|/files/ENCFF644LVU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.94. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF226QHL|/files/ENCFF226QHL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.94 and a self consistency ratio of 3.54. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EVB | float |
TF_ChIP-seq_ENCSR000EVB |
TF_ChIP-seq ENCSR000EVB [biosample_summary="Homo sapiens HEK293" and target="ELK4"]
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[9.24, 979] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF226QHL.bed.gz | 36.46 KB | 40f7f10d3456f80b54bdf3e7770517cd |
| ENCFF226QHL.bed.gz.dvc | 99.0 B | c4a6c5e4485c30410fb822df4783e228 |
| ENCFF226QHL.tabix.bed.gz | 26.56 KB | 2afdd602103e525832a486adeff327fc |
| ENCFF226QHL.tabix.bed.gz.dvc | 105.0 B | 1293f5366b98c3bd368ab85ba523af2d |
| ENCFF226QHL.tabix.bed.gz.tbi | 20.08 KB | 4b00b973c6269976c121bf421c4d2c18 |
| ENCFF226QHL.tabix.bed.gz.tbi.dvc | 109.0 B | 4562cfc7602b643dd7f990c5837f18f4 |
| genomic_resource.yaml | 3.91 KB | 2975a9d3e4befa252753e63b22469f9e |
| genomic_resource_original.yaml | 3.82 KB | 40490ffb4e5b49d5439d9ce44fb1ef4c |
| statistics/ |