type: position_score
table:
  filename: ENCFF721FYE.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EUZ
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EUZ [biosample_summary="Homo sapiens HEK293" and target="TRIM28"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EUZ [biosample_summary="Homo sapiens HEK293" and target="TRIM28"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN593AVV|/analyses/ENCAN593AVV/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF642DXY|/files/ENCFF642DXY/}, {ENCFF721FYE|/files/ENCFF721FYE/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.80 and\
    \ a self consistency ratio of 1.30. According to ENCODE standards, having both\
    \ rescue ratio and self consistency ratio values < 2 is recommended, but having\
    \ only one of the ratio values < 2 is acceptable.\n\n**audit\\_warning**: Replicate\
    \ concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible\
    \ Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF046VYV|/files/ENCFF046VYV/},\
    \ {ENCFF210BOH|/files/ENCFF210BOH/} processed by ChIP-seq ENCODE3 hg19 pipeline\
    \ have a rescue ratio of 2.80 and a self consistency ratio of 1.30. According\
    \ to ENCODE standards, having both rescue ratio and self consistency ratio values\
    \ < 2 is recommended, but having only one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EUZ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HEK293
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001182/
    perturbed: false
    doi: 10.17989/ENCSR000EUZ
    date_created: '2014-02-12T22:41:54.908927+00:00'
    date_released: '2011-10-29'
    submitter_comment: 'Fastq files ENCFF000WYV and ENCFF000WYW contain reads of mixed
      lengths. Read lengths followed by respective number of reads: ENCFF000WYV (32,
      21047886), (36, 48358172); ENCFF000WYW (32, 41799054), (36, 49579320).'
    target: TRIM28
