TF_ChIP-seq_ENCSR000EUV
TF_ChIP-seq ENCSR000EUV [biosample_summary="Homo sapiens HCT116" and target="TCF7L2"]
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| Id: | TF_ChIP-seq/ENCSR000EUV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EUV [biosamplesummary="Homo sapiens HCT116" and target="TCF7L2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_error: Processed alignments file {ENCFF690REU|/files/ENCFF690REU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4624844 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF7L2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Archived analysis {ENCAN387GPM|/analyses/ENCAN387GPM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF199EHQ|/files/ENCFF199EHQ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_not_compliant: Processed alignments file {ENCFF470XCI|/files/ENCFF470XCI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8118419 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF7L2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF736EVD|/files/ENCFF736EVD/}, {ENCFF199EHQ|/files/ENCFF199EHQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 2.85. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF333WEH|/files/ENCFF333WEH/}, {ENCFF274IDK|/files/ENCFF274IDK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 2.85. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EUV | float |
TF_ChIP-seq_ENCSR000EUV |
TF_ChIP-seq ENCSR000EUV [biosample_summary="Homo sapiens HCT116" and target="TCF7L2"]
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[2.46, 640] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF199EHQ.bed.gz | 346.57 KB | 793655e2d0b912ade036e3cd0784f56f |
| ENCFF199EHQ.bed.gz.dvc | 100.0 B | d309eb41d410b6113061f9048cefab92 |
| ENCFF199EHQ.tabix.bed.gz | 253.57 KB | 026548c73e0681afdcc041bee0b666be |
| ENCFF199EHQ.tabix.bed.gz.dvc | 106.0 B | e6958a887e2675f4fe0bd1a8efc19f73 |
| ENCFF199EHQ.tabix.bed.gz.tbi | 133.86 KB | 2ae6a4f381691f2165bb115eefd323bf |
| ENCFF199EHQ.tabix.bed.gz.tbi.dvc | 110.0 B | a28dc0b753cccb22c6076007508a6ce6 |
| genomic_resource.yaml | 3.81 KB | 7a85d24a8b8e97252d7183f877842611 |
| genomic_resource_original.yaml | 3.71 KB | d14ed4738ac9e2cd3eded7f59a5aebd9 |
| statistics/ |