TF_ChIP-seq_ENCSR000EUU
TF_ChIP-seq ENCSR000EUU [biosample_summary="Homo sapiens HCT116" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000EUU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EUU [biosamplesummary="Homo sapiens HCT116" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF271RGE|/files/ENCFF271RGE/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN769JJJ|/analyses/ENCAN769JJJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_error: Processed alignments file {ENCFF339ZRD|/files/ENCFF339ZRD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4225138 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF876UIJ|/files/ENCFF876UIJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 7235645 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF271RGE|/files/ENCFF271RGE/}, {ENCFF786BQV|/files/ENCFF786BQV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.08 and a self consistency ratio of 4.61. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF804JZT|/files/ENCFF804JZT/}, {ENCFF192GSD|/files/ENCFF192GSD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.08 and a self consistency ratio of 4.61. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EUU | float |
TF_ChIP-seq_ENCSR000EUU |
TF_ChIP-seq ENCSR000EUU [biosample_summary="Homo sapiens HCT116" and target="POLR2A"]
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[2.45, 449] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF271RGE.bed.gz | 275.22 KB | ee3974d8389d950dc2fc7549a90a7255 |
| ENCFF271RGE.bed.gz.dvc | 100.0 B | 181855785e56fc2440ee69b4be38dea9 |
| ENCFF271RGE.tabix.bed.gz | 238.07 KB | c37e37cc8660604c457f6d58c4a5b972 |
| ENCFF271RGE.tabix.bed.gz.dvc | 106.0 B | fe9868ca34f20f894292723111991c97 |
| ENCFF271RGE.tabix.bed.gz.tbi | 93.44 KB | e0aa4f2bfa25be22bd61fea21e85fc41 |
| ENCFF271RGE.tabix.bed.gz.tbi.dvc | 109.0 B | d7f055c96c842649b2fe968b823fc8ec |
| genomic_resource.yaml | 3.8 KB | 9c13bb34a2f6ba9b2b30a9c50895005b |
| genomic_resource_original.yaml | 3.71 KB | 36cbb856dc0c83ecc51765285b1334b5 |
| statistics/ |