TF_ChIP-seq_ENCSR000EUQ
TF_ChIP-seq ENCSR000EUQ [biosample_summary="Homo sapiens H1" and target="SUZ12"]
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| Id: | TF_ChIP-seq/ENCSR000EUQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EUQ [biosamplesummary="Homo sapiens H1" and target="SUZ12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN243ZGA|/analyses/ENCAN243ZGA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF714YJQ|/files/ENCFF714YJQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8999195 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SUZ12-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF295PYU|/files/ENCFF295PYU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10483435 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SUZ12-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF062SBW|/files/ENCFF062SBW/}, {ENCFF492FGR|/files/ENCFF492FGR/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 5.59. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF329OBF|/files/ENCFF329OBF/}, {ENCFF336XCQ|/files/ENCFF336XCQ/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 5.59. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EUQ | float |
TF_ChIP-seq_ENCSR000EUQ |
TF_ChIP-seq ENCSR000EUQ [biosample_summary="Homo sapiens H1" and target="SUZ12"]
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[3.45, 87.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF062SBW.bed.gz | 74.75 KB | 0ceda548faa288b705b6a4c1090317b6 |
| ENCFF062SBW.bed.gz.dvc | 99.0 B | d81f0739e45fce9c8b8b3490c872d91c |
| ENCFF062SBW.tabix.bed.gz | 51.33 KB | 14a5316ae22dfb1270e14362aec73c2a |
| ENCFF062SBW.tabix.bed.gz.dvc | 105.0 B | d7f66f239d88bcbc8f2d2cff7db5fd53 |
| ENCFF062SBW.tabix.bed.gz.tbi | 23.29 KB | 0e574f47f440b1f864cf30a1deb15f10 |
| ENCFF062SBW.tabix.bed.gz.tbi.dvc | 109.0 B | d6b011a47707bd16bf1d98a97afed667 |
| genomic_resource.yaml | 3.46 KB | b082e63fdb0de6893cd9ea4008649f72 |
| genomic_resource_original.yaml | 3.37 KB | ac248a32bc03442fd379235a478140d5 |
| statistics/ |