TF_ChIP-seq_ENCSR000EUI
TF_ChIP-seq ENCSR000EUI [biosample_summary="Homo sapiens GM08714" and target="ZNF274"]
×
| Id: | TF_ChIP-seq/ENCSR000EUI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EUI [biosamplesummary="Homo sapiens GM08714" and target="ZNF274"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN129SCE|/analyses/ENCAN129SCE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF650DWC|/files/ENCFF650DWC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13083204 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF274-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF477UBE|/files/ENCFF477UBE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18719906 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF274-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF650DWC|/files/ENCFF650DWC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF650DWC|/files/ENCFF650DWC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.59. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EUI | float |
TF_ChIP-seq_ENCSR000EUI |
TF_ChIP-seq ENCSR000EUI [biosample_summary="Homo sapiens GM08714" and target="ZNF274"]
|
|
[6.74, 683] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF757CRW.bed.gz | 18.95 KB | 1362aba67dcd62317c81e96eb29b58e0 |
| ENCFF757CRW.bed.gz.dvc | 99.0 B | 6df2b13515dee72072f4eaef826b340f |
| ENCFF757CRW.tabix.bed.gz | 13.71 KB | 3f0645d424584f7cba4b87bd8294a9a7 |
| ENCFF757CRW.tabix.bed.gz.dvc | 105.0 B | da76627ef0252fa475ecff5b5593997e |
| ENCFF757CRW.tabix.bed.gz.tbi | 11.38 KB | d5f75e579e722af8b7d04abab23a65a2 |
| ENCFF757CRW.tabix.bed.gz.tbi.dvc | 109.0 B | 9bbccfb1adfdfa3abc1ee8042829a4bf |
| genomic_resource.yaml | 3.64 KB | ce144426dc18a7ecbee2bab176c2650b |
| genomic_resource_original.yaml | 3.55 KB | 22acff6441b0790eb692308e1ecdd845 |
| statistics/ |