TF_ChIP-seq_ENCSR000EIA
TF_ChIP-seq ENCSR000EIA [biosample_summary="Homo sapiens SK-N-SH" and target="MXI1"]
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| Id: | TF_ChIP-seq/ENCSR000EIA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EIA [biosamplesummary="Homo sapiens SK-N-SH" and target="MXI1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN482IOD|/analyses/ENCAN482IOD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN482IOD|/analyses/ENCAN482IOD/} has in progress subobject document {8dec71a6-7a1a-408c-ac4b-bbb8bde24de5|/documents/8dec71a6-7a1a-408c-ac4b-bbb8bde24de5/} audit_warning: Processed alignments file {ENCFF146MNJ|/files/ENCFF146MNJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19887524 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MXI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF444RRI|/files/ENCFF444RRI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF444RRI|/files/ENCFF444RRI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF146MNJ|/files/ENCFF146MNJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF146MNJ|/files/ENCFF146MNJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.70. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EIA | float |
TF_ChIP-seq_ENCSR000EIA |
TF_ChIP-seq ENCSR000EIA [biosample_summary="Homo sapiens SK-N-SH" and target="MXI1"]
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[7.25, 529] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF064KLD.bed.gz | 696.16 KB | 69aa21c4cdd1c26d3a620ef9567599ad |
| ENCFF064KLD.bed.gz.dvc | 100.0 B | 2c254d81f5f72ffbca1a1644abdffefb |
| ENCFF064KLD.tabix.bed.gz | 521.22 KB | 29439d2fdeb9f60849a9c21aa0ba7d19 |
| ENCFF064KLD.tabix.bed.gz.dvc | 106.0 B | f4060802a23eb3e0fcc09f79dd586c98 |
| ENCFF064KLD.tabix.bed.gz.tbi | 191.79 KB | cf0f83c9b682eeb955fe09bb6ba2c301 |
| ENCFF064KLD.tabix.bed.gz.tbi.dvc | 110.0 B | 61de72df6365303371971a27abc54636 |
| genomic_resource.yaml | 4.69 KB | bccaefb9fd5848f830892e7977b4f188 |
| genomic_resource_original.yaml | 4.59 KB | b671660c05975e1e24ecb34eac08f127 |
| statistics/ |