TF_ChIP-seq_ENCSR000EHZ
TF_ChIP-seq ENCSR000EHZ [biosample_summary="Homo sapiens SK-N-SH" and target="NRF1"]
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| Id: | TF_ChIP-seq/ENCSR000EHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EHZ [biosamplesummary="Homo sapiens SK-N-SH" and target="NRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN259KAQ|/analyses/ENCAN259KAQ/} has in progress subobject document {ecc2b191-b763-4481-9d24-237b0399fe3d|/documents/ecc2b191-b763-4481-9d24-237b0399fe3d/} audit_internal_action: Released analysis {ENCAN259KAQ|/analyses/ENCAN259KAQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF842IXK|/files/ENCFF842IXK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11026731 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NRF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF842IXK|/files/ENCFF842IXK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF842IXK|/files/ENCFF842IXK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EHZ | float |
TF_ChIP-seq_ENCSR000EHZ |
TF_ChIP-seq ENCSR000EHZ [biosample_summary="Homo sapiens SK-N-SH" and target="NRF1"]
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[4.55, 516] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF991VQX.bed.gz | 178.45 KB | 0b38a208f4f12dfdda081f9122e7ba3a |
| ENCFF991VQX.bed.gz.dvc | 100.0 B | c221fffa6a08c163f26cf629dd29b91e |
| ENCFF991VQX.tabix.bed.gz | 122.16 KB | b67d9d9fa668ab7597f7db439269778b |
| ENCFF991VQX.tabix.bed.gz.dvc | 106.0 B | d483bf8e7987730bf70449a98b895fd8 |
| ENCFF991VQX.tabix.bed.gz.tbi | 84.88 KB | addd5c76167b6f2cd1f1a4c38619698f |
| ENCFF991VQX.tabix.bed.gz.tbi.dvc | 109.0 B | b8c98613d53544c74181f4390ac57e00 |
| genomic_resource.yaml | 3.38 KB | 6aa917799f75432b8f8bac989f9796de |
| genomic_resource_original.yaml | 3.28 KB | f0fa8c98dd8dcbc67528444193d6acfa |
| statistics/ |