TF_ChIP-seq_ENCSR000EHY
TF_ChIP-seq ENCSR000EHY [biosample_summary="Homo sapiens SK-N-SH" and target="RFX5"]
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| Id: | TF_ChIP-seq/ENCSR000EHY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EHY [biosamplesummary="Homo sapiens SK-N-SH" and target="RFX5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN876DHA|/analyses/ENCAN876DHA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN876DHA|/analyses/ENCAN876DHA/} has in progress subobject document {3b0cd012-978d-4ac6-8d7a-51d28297be9d|/documents/3b0cd012-978d-4ac6-8d7a-51d28297be9d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF427BUD|/files/ENCFF427BUD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF427BUD|/files/ENCFF427BUD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.34. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF396JZB|/files/ENCFF396JZB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF396JZB|/files/ENCFF396JZB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EHY | float |
TF_ChIP-seq_ENCSR000EHY |
TF_ChIP-seq ENCSR000EHY [biosample_summary="Homo sapiens SK-N-SH" and target="RFX5"]
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[6.82, 613] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF765QVM.bed.gz | 156.71 KB | 6454360ee8d0b635aa9c6d8ea626d552 |
| ENCFF765QVM.bed.gz.dvc | 100.0 B | 2c8066d494971e000a6bfb1f8090170b |
| ENCFF765QVM.tabix.bed.gz | 106.71 KB | 035558ae0745af1427712f659008a49c |
| ENCFF765QVM.tabix.bed.gz.dvc | 106.0 B | 409d032f756cd1384d11ef87db2af48d |
| ENCFF765QVM.tabix.bed.gz.tbi | 73.33 KB | 9cfd4533347fc9feebff03e088400d2a |
| ENCFF765QVM.tabix.bed.gz.tbi.dvc | 109.0 B | 964979736beae8bfd07ee5cbe3fa14c9 |
| genomic_resource.yaml | 4.19 KB | 5f811caaff73eaa7689654a3efced4a3 |
| genomic_resource_original.yaml | 4.09 KB | 4e2a8879e65ac6fb68aebe955feefb5e |
| statistics/ |