TF_ChIP-seq_ENCSR000EHX
TF_ChIP-seq ENCSR000EHX [biosample_summary="Homo sapiens SK-N-SH" and target="RAD21"]
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| Id: | TF_ChIP-seq/ENCSR000EHX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EHX [biosamplesummary="Homo sapiens SK-N-SH" and target="RAD21"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN719COE|/analyses/ENCAN719COE/} has in progress subobject document {b955aaff-f437-41c4-a9f3-0c8810f6eae0|/documents/b955aaff-f437-41c4-a9f3-0c8810f6eae0/} audit_internal_action: Released analysis {ENCAN719COE|/analyses/ENCAN719COE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF282ZRC|/files/ENCFF282ZRC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF282ZRC|/files/ENCFF282ZRC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EHX | float |
TF_ChIP-seq_ENCSR000EHX |
TF_ChIP-seq ENCSR000EHX [biosample_summary="Homo sapiens SK-N-SH" and target="RAD21"]
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[5.81, 513] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF051ZRW.bed.gz | 923.52 KB | 631ef0c847ce2e60d84dd4a6198937a7 |
| ENCFF051ZRW.bed.gz.dvc | 100.0 B | 44affe6ec6b37697f7540242848fe0c6 |
| ENCFF051ZRW.tabix.bed.gz | 643.67 KB | 6e2d87e720515eb704edcdec37bdd0c4 |
| ENCFF051ZRW.tabix.bed.gz.dvc | 106.0 B | 0d7faf1114c461ca3a8aceeffbc09756 |
| ENCFF051ZRW.tabix.bed.gz.tbi | 328.53 KB | 206c4be45bfe2d572cc7dd3031a5a256 |
| ENCFF051ZRW.tabix.bed.gz.tbi.dvc | 110.0 B | f4be285ab6bfa4b46dbab4b116f5435d |
| genomic_resource.yaml | 2.88 KB | de306226063f375fd77cb71a38c0c6d6 |
| genomic_resource_original.yaml | 2.78 KB | 9bcdb2963c91fdb1703ffb84deb761e2 |
| statistics/ |