TF_ChIP-seq_ENCSR000EHO
TF_ChIP-seq ENCSR000EHO [biosample_summary="Homo sapiens K562" and target="SMARCA4"]
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| Id: | TF_ChIP-seq/ENCSR000EHO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EHO [biosamplesummary="Homo sapiens K562" and target="SMARCA4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN706PYI|/analyses/ENCAN706PYI/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF703NAE|/files/ENCFF703NAE/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_not_compliant: Processed alignments file {ENCFF670DXN|/files/ENCFF670DXN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9461497 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMARCA4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF035WPI|/files/ENCFF035WPI/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11229135 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMARCA4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF714WNT|/files/ENCFF714WNT/}, {ENCFF703NAE|/files/ENCFF703NAE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.52 and a self consistency ratio of 2.77. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF253EAE|/files/ENCFF253EAE/}, {ENCFF609IDD|/files/ENCFF609IDD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.52 and a self consistency ratio of 2.77. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EHO | float |
TF_ChIP-seq_ENCSR000EHO |
TF_ChIP-seq ENCSR000EHO [biosample_summary="Homo sapiens K562" and target="SMARCA4"]
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[4.03, 121] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF703NAE.bed.gz | 69.58 KB | 4cdefb528e2b466dc2060dfac36e2596 |
| ENCFF703NAE.bed.gz.dvc | 99.0 B | 8fe8c7791b96583a483f8bd9d8643165 |
| ENCFF703NAE.tabix.bed.gz | 51.61 KB | 96567d09017fc67e69ff18781d0ff3a4 |
| ENCFF703NAE.tabix.bed.gz.dvc | 105.0 B | cf29a9001497ae6f35023c4c0c26be34 |
| ENCFF703NAE.tabix.bed.gz.tbi | 30.88 KB | 257f4e6d5157dd89de4810e78eedb649 |
| ENCFF703NAE.tabix.bed.gz.tbi.dvc | 109.0 B | e4626eb661ca4f5660823a660a557251 |
| genomic_resource.yaml | 3.67 KB | 298a8b195dcfd0405cd1118b19d284b5 |
| genomic_resource_original.yaml | 3.57 KB | 98b74126b3ab10f1a68917001c42aa4d |
| statistics/ |