TF_ChIP-seq_ENCSR000EHH
TF_ChIP-seq ENCSR000EHH [biosample_summary="Homo sapiens K562" and target="NRF1"]
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| Id: | TF_ChIP-seq/ENCSR000EHH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EHH [biosamplesummary="Homo sapiens K562" and target="NRF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF174DVW|/files/ENCFF174DVW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 3624859 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NRF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN390HVE|/analyses/ENCAN390HVE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN390HVE|/analyses/ENCAN390HVE/} has in progress subobject document {6c5ccc37-b301-436c-b455-6178f2df7c51|/documents/6c5ccc37-b301-436c-b455-6178f2df7c51/} audit_warning: Processed alignments file {ENCFF718OLQ|/files/ENCFF718OLQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15385621 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NRF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF718OLQ|/files/ENCFF718OLQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.94. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF410RJD|/files/ENCFF410RJD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.89 and a self consistency ratio of 5.87. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EHH | float |
TF_ChIP-seq_ENCSR000EHH |
TF_ChIP-seq ENCSR000EHH [biosample_summary="Homo sapiens K562" and target="NRF1"]
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[3.12, 274] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF410RJD.bed.gz | 77.94 KB | 3c3b4f0891b26a598aec80b7541d174a |
| ENCFF410RJD.bed.gz.dvc | 99.0 B | 109d357a3135a4d4cca948cd25bd53d9 |
| ENCFF410RJD.tabix.bed.gz | 53.12 KB | 80617dee6c1711f1e55a1cbb3171581c |
| ENCFF410RJD.tabix.bed.gz.dvc | 105.0 B | 61fcad655c1eb8bc7b4b57d820dbffd8 |
| ENCFF410RJD.tabix.bed.gz.tbi | 44.59 KB | ba50c0c3c43fd372605a17f338a14478 |
| ENCFF410RJD.tabix.bed.gz.tbi.dvc | 109.0 B | bc5d960169f36c247071c0d23590cca8 |
| genomic_resource.yaml | 3.74 KB | fb6e54a04fc4d04900c308d6ca85b63c |
| genomic_resource_original.yaml | 3.64 KB | 5e50b299f978b01b7f0d252b7dcc216f |
| statistics/ |