TF_ChIP-seq_ENCSR000EGZ
TF_ChIP-seq ENCSR000EGZ [biosample_summary="Homo sapiens K562" and target="MXI1"]
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| Id: | TF_ChIP-seq/ENCSR000EGZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EGZ [biosamplesummary="Homo sapiens K562" and target="MXI1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN228JXD|/analyses/ENCAN228JXD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN228JXD|/analyses/ENCAN228JXD/} has in progress subobject document {4a52ff62-eaff-400a-b3ab-92cd5b920aa8|/documents/4a52ff62-eaff-400a-b3ab-92cd5b920aa8/} audit_warning: Processed alignments file {ENCFF544ITN|/files/ENCFF544ITN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19080269 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MXI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF358DIK|/files/ENCFF358DIK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17050719 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MXI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF358DIK|/files/ENCFF358DIK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF358DIK|/files/ENCFF358DIK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EGZ | float |
TF_ChIP-seq_ENCSR000EGZ |
TF_ChIP-seq ENCSR000EGZ [biosample_summary="Homo sapiens K562" and target="MXI1"]
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[5.62, 441] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF068IGH.bed.gz | 161.32 KB | 9f8d21cbc2179a3e2c47ff6ecc8d9af1 |
| ENCFF068IGH.bed.gz.dvc | 100.0 B | c71afe4e38f13582bd18c65bbb071e36 |
| ENCFF068IGH.tabix.bed.gz | 114.05 KB | 4ea86ca53b3c5ddffd518d170cdac2bb |
| ENCFF068IGH.tabix.bed.gz.dvc | 106.0 B | 12b1e0e36674835a0102acb05585558e |
| ENCFF068IGH.tabix.bed.gz.tbi | 67.58 KB | c1d05fd713df04461b028c4af66131a9 |
| ENCFF068IGH.tabix.bed.gz.tbi.dvc | 109.0 B | dd866772994e95f21efa70f7e798c463 |
| genomic_resource.yaml | 3.87 KB | 57c805da962de365a6bff7ae04296ebb |
| genomic_resource_original.yaml | 3.77 KB | ece7e76310062f4583da4038fd60cc4e |
| statistics/ |