TF_ChIP-seq_ENCSR000EGO
TF_ChIP-seq ENCSR000EGO [biosample_summary="Homo sapiens K562" and target="RFX5"]
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| Id: | TF_ChIP-seq/ENCSR000EGO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EGO [biosamplesummary="Homo sapiens K562" and target="RFX5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF201YKU|/files/ENCFF201YKU/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN283YKM|/analyses/ENCAN283YKM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF230AXK|/files/ENCFF230AXK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15549172 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RFX5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF230AXK|/files/ENCFF230AXK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF230AXK|/files/ENCFF230AXK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.36. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EGO | float |
TF_ChIP-seq_ENCSR000EGO |
TF_ChIP-seq ENCSR000EGO [biosample_summary="Homo sapiens K562" and target="RFX5"]
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[6.02, 632] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF201YKU.bed.gz | 50.92 KB | 65cdb837880f17e81c348718cbe89cdc |
| ENCFF201YKU.bed.gz.dvc | 99.0 B | 522d77060d4006614b49dce848cf1fbc |
| ENCFF201YKU.tabix.bed.gz | 34.48 KB | 6254dcaed9a1e2100413164a3bff376c |
| ENCFF201YKU.tabix.bed.gz.dvc | 105.0 B | 47a8965241bc93b0cb440b205dc1f283 |
| ENCFF201YKU.tabix.bed.gz.tbi | 27.25 KB | 9560755ebdbb62e32a342d222632c120 |
| ENCFF201YKU.tabix.bed.gz.tbi.dvc | 109.0 B | c6e64feca54583e605d1a6addca7446e |
| genomic_resource.yaml | 3.32 KB | d931d350fd6f749228159d2b26ca1fa5 |
| genomic_resource_original.yaml | 3.23 KB | 0726798cf3df468f7f50fa03524df050 |
| statistics/ |