TF_ChIP-seq_ENCSR000EGN
TF_ChIP-seq ENCSR000EGN [biosample_summary="Homo sapiens K562" and target="JUND"]
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| Id: | TF_ChIP-seq/ENCSR000EGN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EGN [biosamplesummary="Homo sapiens K562" and target="JUND"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF213EYD|/files/ENCFF213EYD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN757CTA|/analyses/ENCAN757CTA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF400BSN|/files/ENCFF400BSN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14992289 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF067ULI|/files/ENCFF067ULI/}, {ENCFF201ONX|/files/ENCFF201ONX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF826HDC|/files/ENCFF826HDC/}, {ENCFF213EYD|/files/ENCFF213EYD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EGN | float |
TF_ChIP-seq_ENCSR000EGN |
TF_ChIP-seq ENCSR000EGN [biosample_summary="Homo sapiens K562" and target="JUND"]
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[5.93, 489] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF213EYD.bed.gz | 789.42 KB | 46a248a637663e0555402451943362c9 |
| ENCFF213EYD.bed.gz.dvc | 100.0 B | 213343c193cdb3f3183ec13d231a9b85 |
| ENCFF213EYD.tabix.bed.gz | 557.31 KB | 44bf1d0c706d1de67fb8d5d913efe76b |
| ENCFF213EYD.tabix.bed.gz.dvc | 106.0 B | fd8f4fd045fa0c780a48c2cae4104639 |
| ENCFF213EYD.tabix.bed.gz.tbi | 245.5 KB | bad5f66da110e4f1edb1ae44c602cee5 |
| ENCFF213EYD.tabix.bed.gz.tbi.dvc | 110.0 B | 0ef27c1f452c5474f6fa5d3259b531f9 |
| genomic_resource.yaml | 3.15 KB | 2f0b73e83e2ff06ce5fd3f91f944f8d1 |
| genomic_resource_original.yaml | 3.06 KB | 111a8f4a6b885a0fc59db6f41d657348 |
| statistics/ |