TF_ChIP-seq_ENCSR000EGM
TF_ChIP-seq ENCSR000EGM [biosample_summary="Homo sapiens K562" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000EGM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EGM [biosamplesummary="Homo sapiens K562" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN896YNO|/analyses/ENCAN896YNO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF396BZQ|/files/ENCFF396BZQ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF198CVB|/files/ENCFF198CVB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF198CVB|/files/ENCFF198CVB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EGM | float |
TF_ChIP-seq_ENCSR000EGM |
TF_ChIP-seq ENCSR000EGM [biosample_summary="Homo sapiens K562" and target="CTCF"]
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[6.44, 593] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF396BZQ.bed.gz | 890.82 KB | ec6d58713b0306f762dbc4cab091df71 |
| ENCFF396BZQ.bed.gz.dvc | 100.0 B | 398ae262a67b4ff751447123f11cae71 |
| ENCFF396BZQ.tabix.bed.gz | 670.68 KB | bd646e07af1ef83326f110aa2463bf40 |
| ENCFF396BZQ.tabix.bed.gz.dvc | 106.0 B | 947b648f0497cc09780c4ae33e2829de |
| ENCFF396BZQ.tabix.bed.gz.tbi | 328.85 KB | 6ea6ea2b565bc7131c0e12d1ea4c759c |
| ENCFF396BZQ.tabix.bed.gz.tbi.dvc | 110.0 B | 47f9d6b4a6b45a3446cb49a2129d70b3 |
| genomic_resource.yaml | 2.93 KB | b48a32824dbd4035d33879aae95c1854 |
| genomic_resource_original.yaml | 2.83 KB | 34cf819b1d3bf56fe60342af1ccb7ad2 |
| statistics/ |