TF_ChIP-seq_ENCSR000EGD
TF_ChIP-seq ENCSR000EGD [biosample_summary="Homo sapiens K562" and target="BACH1"]
×
| Id: | TF_ChIP-seq/ENCSR000EGD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EGD [biosamplesummary="Homo sapiens K562" and target="BACH1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN526IXJ|/analyses/ENCAN526IXJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF751ATX|/files/ENCFF751ATX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13733774 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BACH1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF866OHV|/files/ENCFF866OHV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF866OHV|/files/ENCFF866OHV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.56. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EGD | float |
TF_ChIP-seq_ENCSR000EGD |
TF_ChIP-seq ENCSR000EGD [biosample_summary="Homo sapiens K562" and target="BACH1"]
|
|
[5.65, 565] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF423EMU.bed.gz | 86.54 KB | 4a5e60199fc2e91ed05449790c0ead65 |
| ENCFF423EMU.bed.gz.dvc | 99.0 B | db6d5f32d5d1378d2dd0c21edd8391e2 |
| ENCFF423EMU.tabix.bed.gz | 58.46 KB | cfe8c3978462a05a9495f7dedf954dba |
| ENCFF423EMU.tabix.bed.gz.dvc | 105.0 B | ae62ed512fedd45e88b3e71d245fba09 |
| ENCFF423EMU.tabix.bed.gz.tbi | 45.55 KB | 79bdbb8028fc684ef6032fbaad36bfee |
| ENCFF423EMU.tabix.bed.gz.tbi.dvc | 109.0 B | 4021ae559d2387434240e71637ee3399 |
| genomic_resource.yaml | 3.14 KB | 23143960c4312eddef61a6f3f2bb78d2 |
| genomic_resource_original.yaml | 3.04 KB | 3acc9d497de1b5cb563c05f0c942daa4 |
| statistics/ |