TF_ChIP-seq_ENCSR000EFY
TF_ChIP-seq ENCSR000EFY [biosample_summary="Homo sapiens K562" and target="ARID3A"]
×
| Id: | TF_ChIP-seq/ENCSR000EFY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EFY [biosamplesummary="Homo sapiens K562" and target="ARID3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN552USY|/analyses/ENCAN552USY/} has in progress subobject document {09da1bc2-5ee6-4508-9236-7a19b85021bd|/documents/09da1bc2-5ee6-4508-9236-7a19b85021bd/} audit_internal_action: Released analysis {ENCAN552USY|/analyses/ENCAN552USY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF698ALO|/files/ENCFF698ALO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10660476 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ARID3A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF891OQP|/files/ENCFF891OQP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.06 and a self consistency ratio of 3.88. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EFY | float |
TF_ChIP-seq_ENCSR000EFY |
TF_ChIP-seq ENCSR000EFY [biosample_summary="Homo sapiens K562" and target="ARID3A"]
|
|
[5.43, 217] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF891OQP.bed.gz | 198.4 KB | ad1da7a6e04fda46b1c45960a991c0ee |
| ENCFF891OQP.bed.gz.dvc | 100.0 B | 0004a2ddc44fc5bd80d32f91ea7d27d0 |
| ENCFF891OQP.tabix.bed.gz | 140.59 KB | c2a3436b402df32a316e066181823f0d |
| ENCFF891OQP.tabix.bed.gz.dvc | 106.0 B | fa9f0d9fcefc66d5e89fbc33e00cbbfd |
| ENCFF891OQP.tabix.bed.gz.tbi | 83.38 KB | 595b1431933cb001e7c13c10d974f4c2 |
| ENCFF891OQP.tabix.bed.gz.tbi.dvc | 109.0 B | 83f4c4b5ad5f4f71e198f17089fa848f |
| genomic_resource.yaml | 2.6 KB | fd02ebc23b75150ee98222667f4017c7 |
| genomic_resource_original.yaml | 2.51 KB | 202be777bacd10a941fc5ebe25fb7c98 |
| statistics/ |