TF_ChIP-seq_ENCSR000EFW
TF_ChIP-seq ENCSR000EFW [biosample_summary="Homo sapiens K562" and target="UBTF"]
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| Id: | TF_ChIP-seq/ENCSR000EFW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EFW [biosamplesummary="Homo sapiens K562" and target="UBTF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN969BKY|/analyses/ENCAN969BKY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF612GKN|/files/ENCFF612GKN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14509766 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting UBTF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF323NCS|/files/ENCFF323NCS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11542772 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting UBTF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF568ZPW|/files/ENCFF568ZPW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 3.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EFW | float |
TF_ChIP-seq_ENCSR000EFW |
TF_ChIP-seq ENCSR000EFW [biosample_summary="Homo sapiens K562" and target="UBTF"]
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[4.75, 389] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF568ZPW.bed.gz | 167.43 KB | 231f5914232270880e136f812221004b |
| ENCFF568ZPW.bed.gz.dvc | 100.0 B | 3bf45d7a5c4d7ac6bda515ac4ecb7c2c |
| ENCFF568ZPW.tabix.bed.gz | 121.64 KB | 4a63ff7cf5253ccde6eec96d71a6c0ff |
| ENCFF568ZPW.tabix.bed.gz.dvc | 106.0 B | fecc070f8251c10871df21dfe2440222 |
| ENCFF568ZPW.tabix.bed.gz.tbi | 62.29 KB | e0d28b4f683463e302c846b5cddb522c |
| ENCFF568ZPW.tabix.bed.gz.tbi.dvc | 109.0 B | 73cf0364ee10af6f2427b534b92bbd43 |
| genomic_resource.yaml | 2.87 KB | 717ad5343dd89346b2739ab9c73acdb6 |
| genomic_resource_original.yaml | 2.78 KB | 94e9efa773f4b2a9c7673bf0c46c4b27 |
| statistics/ |