TF_ChIP-seq_ENCSR000EFT
TF_ChIP-seq ENCSR000EFT [biosample_summary="Homo sapiens K562" and target="GATA1"]
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| Id: | TF_ChIP-seq/ENCSR000EFT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EFT [biosamplesummary="Homo sapiens K562" and target="GATA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN493FJE|/analyses/ENCAN493FJE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN493FJE|/analyses/ENCAN493FJE/} has in progress subobject document {baaf9c93-17e9-4295-88c5-9889b9c8fa6d|/documents/baaf9c93-17e9-4295-88c5-9889b9c8fa6d/} audit_warning: Processed alignments file {ENCFF844WTT|/files/ENCFF844WTT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15202271 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF729MTL|/files/ENCFF729MTL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15968477 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GATA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF844WTT|/files/ENCFF844WTT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF844WTT|/files/ENCFF844WTT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF729MTL|/files/ENCFF729MTL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF729MTL|/files/ENCFF729MTL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.34. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EFT | float |
TF_ChIP-seq_ENCSR000EFT |
TF_ChIP-seq ENCSR000EFT [biosample_summary="Homo sapiens K562" and target="GATA1"]
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[4.85, 437] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF657CTC.bed.gz | 256.67 KB | 4e29a336ecbb7671c5ce01ec9f66e32c |
| ENCFF657CTC.bed.gz.dvc | 100.0 B | 5819855584ac9d58b92dd0321d71bc03 |
| ENCFF657CTC.tabix.bed.gz | 172.82 KB | 7022cbcb2245e0b3ebf0b5d43215d0aa |
| ENCFF657CTC.tabix.bed.gz.dvc | 106.0 B | d42d468bbd888935d2ef4abda92c0237 |
| ENCFF657CTC.tabix.bed.gz.tbi | 110.5 KB | 4f0e61c0179be5a189e601223a9ede2f |
| ENCFF657CTC.tabix.bed.gz.tbi.dvc | 110.0 B | d870eebbc235612b5a664701928932eb |
| genomic_resource.yaml | 5.19 KB | e5bcbfc56fee75018bf73e3dadcfeef9 |
| genomic_resource_original.yaml | 5.09 KB | b86378f0def3045c2e368a28ba9605be |
| statistics/ |