TF_ChIP-seq_ENCSR000EFK
TF_ChIP-seq ENCSR000EFK [biosample_summary="Homo sapiens IMR-90" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000EFK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EFK [biosamplesummary="Homo sapiens IMR-90" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN417YIT|/analyses/ENCAN417YIT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF740GRA|/files/ENCFF740GRA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19656219 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF740GRA|/files/ENCFF740GRA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF740GRA|/files/ENCFF740GRA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EFK | float |
TF_ChIP-seq_ENCSR000EFK |
TF_ChIP-seq ENCSR000EFK [biosample_summary="Homo sapiens IMR-90" and target="POLR2A"]
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[6.31, 605] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF448ZOJ.bed.gz | 480.71 KB | c9e0c637a246785eaa3287012d4dd9b3 |
| ENCFF448ZOJ.bed.gz.dvc | 100.0 B | fda0d2307a1731ad8f2c7fafcb42339c |
| ENCFF448ZOJ.tabix.bed.gz | 346.84 KB | 479fd0d2205d194ea916f5069d5b0289 |
| ENCFF448ZOJ.tabix.bed.gz.dvc | 106.0 B | 132120222e082f5ab2fa8621325ae1f4 |
| ENCFF448ZOJ.tabix.bed.gz.tbi | 125.43 KB | bd0925f669b5c1ffbcf24613639293aa |
| ENCFF448ZOJ.tabix.bed.gz.tbi.dvc | 110.0 B | 0ccdf91b76c9a26f63edabaad00da809 |
| genomic_resource.yaml | 3.16 KB | 25625e7a8ee55068e49525fe043a26c9 |
| genomic_resource_original.yaml | 3.07 KB | bbd824182a6df24599c5929199b0f952 |
| statistics/ |