TF_ChIP-seq_ENCSR000EFG
TF_ChIP-seq ENCSR000EFG [biosample_summary="Homo sapiens IMR-90" and target="RCOR1"]
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| Id: | TF_ChIP-seq/ENCSR000EFG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EFG [biosamplesummary="Homo sapiens IMR-90" and target="RCOR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN230IBA|/analyses/ENCAN230IBA/} has in progress subobject document {f78833b1-a0fc-40be-b5f2-d3a5bdd508ea|/documents/f78833b1-a0fc-40be-b5f2-d3a5bdd508ea/} audit_internal_action: Released analysis {ENCAN230IBA|/analyses/ENCAN230IBA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF890WEE|/files/ENCFF890WEE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 3.78 and a self consistency ratio of 22.91. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF953BSH|/files/ENCFF953BSH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF953BSH|/files/ENCFF953BSH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.11. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF488RIZ|/files/ENCFF488RIZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF488RIZ|/files/ENCFF488RIZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EFG | float |
TF_ChIP-seq_ENCSR000EFG |
TF_ChIP-seq ENCSR000EFG [biosample_summary="Homo sapiens IMR-90" and target="RCOR1"]
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[6.05, 262] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF890WEE.bed.gz | 194.7 KB | 0fad433276df8c889375c71d66d3bf28 |
| ENCFF890WEE.bed.gz.dvc | 100.0 B | c4906176c68b9d23ce0b1489fd31f81f |
| ENCFF890WEE.tabix.bed.gz | 130.17 KB | 57287a57d64aa6988e7e56c9398b67d4 |
| ENCFF890WEE.tabix.bed.gz.dvc | 106.0 B | d985ea158ff589dc7c0ddd065813a066 |
| ENCFF890WEE.tabix.bed.gz.tbi | 83.05 KB | ba357b2fd0d2390d2a0e8527952affa2 |
| ENCFF890WEE.tabix.bed.gz.tbi.dvc | 109.0 B | 15d6247cb863c608ef57d138627fb37c |
| genomic_resource.yaml | 4.74 KB | a0d2106bc470b5788304579fd5366a4b |
| genomic_resource_original.yaml | 4.64 KB | 6a914df7cfbb344c75d44d992ea334a3 |
| statistics/ |