TF_ChIP-seq_ENCSR000EEE
TF_ChIP-seq ENCSR000EEE [biosample_summary="Homo sapiens HepG2" and target="CEBPB"]
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| Id: | TF_ChIP-seq/ENCSR000EEE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EEE [biosamplesummary="Homo sapiens HepG2" and target="CEBPB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF915ZYE|/files/ENCFF915ZYE/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN355UYZ|/analyses/ENCAN355UYZ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF677PSB|/files/ENCFF677PSB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12350092 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CEBPB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF514FUP|/files/ENCFF514FUP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19986088 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CEBPB-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF207MUN|/files/ENCFF207MUN/}, {ENCFF915ZYE|/files/ENCFF915ZYE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.46 and a self consistency ratio of 2.54. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF902HKL|/files/ENCFF902HKL/}, {ENCFF958LQL|/files/ENCFF958LQL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.46 and a self consistency ratio of 2.54. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EEE | float |
TF_ChIP-seq_ENCSR000EEE |
TF_ChIP-seq ENCSR000EEE [biosample_summary="Homo sapiens HepG2" and target="CEBPB"]
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[5.44, 550] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF915ZYE.bed.gz | 873.79 KB | 646a05655761b746834367c803883c45 |
| ENCFF915ZYE.bed.gz.dvc | 100.0 B | 770076b638056fe357fb083023116d0b |
| ENCFF915ZYE.tabix.bed.gz | 594.17 KB | 47f3aacd9dd1b3a898c325be6403d69e |
| ENCFF915ZYE.tabix.bed.gz.dvc | 106.0 B | 3b08f2198c379ba0e8b4c0513764b23f |
| ENCFF915ZYE.tabix.bed.gz.tbi | 318.16 KB | 8ac42a64f64632833615a0209b90eb62 |
| ENCFF915ZYE.tabix.bed.gz.tbi.dvc | 110.0 B | 64063d1493ea6d8645caff5787f3e07b |
| genomic_resource.yaml | 3.66 KB | cd3d0ce84d94c46ff407cd5206ae963f |
| genomic_resource_original.yaml | 3.56 KB | 0aeb44a57413120e5e7572929370c49a |
| statistics/ |