type: position_score
table:
  filename: ENCFF599KZZ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EDU
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000EDU [TISSUE: Homo sapiens HepG2, TARGET: MXI1]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2,\
    \ Rep 3\n\n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN629KHG|/analyses/ENCAN629KHG/} has\
    \ in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN629KHG|/analyses/ENCAN629KHG/}\
    \ has in progress subobject document {b9ed06bc-2e72-46e1-b318-0bba344a8665|/documents/b9ed06bc-2e72-46e1-b318-0bba344a8665/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF838XHB|/files/ENCFF838XHB/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14072850 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ MXI1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF153QSO|/files/ENCFF153QSO/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 19476019 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting MXI1-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**: Replicate\
    \ concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible\
    \ Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF599KZZ|/files/ENCFF599KZZ/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of\
    \ 1.56 and a self consistency ratio of 13.70. According to ENCODE standards, having\
    \ both rescue ratio and self consistency ratio values < 2 is recommended, but\
    \ having only one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EDU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HepG2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR000EDU
    date_created: '2014-02-12T22:43:08.742677+00:00'
    date_released: '2012-08-20'
    submitter_comment: ''
    target: MXI1
