TF_ChIP-seq_ENCSR000EDS
TF_ChIP-seq ENCSR000EDS [biosample_summary="Homo sapiens HepG2" and target="MAX"]
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| Id: | TF_ChIP-seq/ENCSR000EDS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EDS [biosamplesummary="Homo sapiens HepG2" and target="MAX"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN144FWB|/analyses/ENCAN144FWB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN144FWB|/analyses/ENCAN144FWB/} has in progress subobject document {66e1da65-cad9-4dad-a0d9-013e789895c3|/documents/66e1da65-cad9-4dad-a0d9-013e789895c3/} audit_warning: Processed alignments file {ENCFF008WTO|/files/ENCFF008WTO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17498612 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAX-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF881DZX|/files/ENCFF881DZX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15307113 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MAX-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF044NSI|/files/ENCFF044NSI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.20 and a self consistency ratio of 2.50. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EDS | float |
TF_ChIP-seq_ENCSR000EDS |
TF_ChIP-seq ENCSR000EDS [biosample_summary="Homo sapiens HepG2" and target="MAX"]
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[4.99, 399] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF044NSI.bed.gz | 261.35 KB | 2b285525c23ace33a82b082f2ca7d2af |
| ENCFF044NSI.bed.gz.dvc | 100.0 B | ab700f0dff6520bcd300c784b7befd10 |
| ENCFF044NSI.tabix.bed.gz | 180.89 KB | 000191421d156441fa201b2d5291bdee |
| ENCFF044NSI.tabix.bed.gz.dvc | 106.0 B | cc8f6ebbc2690972b7c9fb9f9e93ed63 |
| ENCFF044NSI.tabix.bed.gz.tbi | 98.58 KB | 3dcf2540167ff76264f257a8ebfc9e69 |
| ENCFF044NSI.tabix.bed.gz.tbi.dvc | 110.0 B | 60ee1c636decd32ac6f4c881d9050387 |
| genomic_resource.yaml | 3.09 KB | 00e4f5a2012bb11f7da9c4af2fb283fd |
| genomic_resource_original.yaml | 3.0 KB | 48a022bcdcc8070f4822d9842665cf68 |
| statistics/ |