TF_ChIP-seq_ENCSR000EDQ
TF_ChIP-seq ENCSR000EDQ [biosample_summary="Homo sapiens HepG2" and target="RCOR1"]
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| Id: | TF_ChIP-seq/ENCSR000EDQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EDQ [biosamplesummary="Homo sapiens HepG2" and target="RCOR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN403PVH|/analyses/ENCAN403PVH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF706RIA|/files/ENCFF706RIA/}, {ENCFF298ESK|/files/ENCFF298ESK/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.09 and a self consistency ratio of 2.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF600FKQ|/files/ENCFF600FKQ/}, {ENCFF707FHG|/files/ENCFF707FHG/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.09 and a self consistency ratio of 2.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EDQ | float |
TF_ChIP-seq_ENCSR000EDQ |
TF_ChIP-seq ENCSR000EDQ [biosample_summary="Homo sapiens HepG2" and target="RCOR1"]
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[9.29, 337] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF706RIA.bed.gz | 98.9 KB | 6d0a14b130b1f915375be8647eed081c |
| ENCFF706RIA.bed.gz.dvc | 100.0 B | e41e00f927cf6f94730da166456e956d |
| ENCFF706RIA.tabix.bed.gz | 67.22 KB | f65aaed8bd408c50bd4e68972b0a6301 |
| ENCFF706RIA.tabix.bed.gz.dvc | 105.0 B | dafa067ee6a572b38abb201b877bcc42 |
| ENCFF706RIA.tabix.bed.gz.tbi | 47.28 KB | e8a1079ba5ae9e8c5dec990803ecea81 |
| ENCFF706RIA.tabix.bed.gz.tbi.dvc | 109.0 B | 312230d141f32c58f803a557b3810afa |
| genomic_resource.yaml | 2.47 KB | 214c0ea82db6aa3f644ce8e03af69edf |
| genomic_resource_original.yaml | 2.38 KB | 841ff0e8941413b93632ccdfb69057b1 |
| statistics/ |