TF_ChIP-seq_ENCSR000EDB
TF_ChIP-seq ENCSR000EDB [biosample_summary="Homo sapiens HeLa-S3" and target="BRCA1"]
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| Id: | TF_ChIP-seq/ENCSR000EDB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EDB [biosamplesummary="Homo sapiens HeLa-S3" and target="BRCA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN981CAV|/analyses/ENCAN981CAV/} has in progress subobject document {7b24a212-141e-4c84-bb19-9f4172b639c7|/documents/7b24a212-141e-4c84-bb19-9f4172b639c7/} audit_internal_action: Released analysis {ENCAN981CAV|/analyses/ENCAN981CAV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF965ESP|/files/ENCFF965ESP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16893644 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BRCA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF576TUJ|/files/ENCFF576TUJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14216985 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BRCA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF965ESP|/files/ENCFF965ESP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF965ESP|/files/ENCFF965ESP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EDB | float |
TF_ChIP-seq_ENCSR000EDB |
TF_ChIP-seq ENCSR000EDB [biosample_summary="Homo sapiens HeLa-S3" and target="BRCA1"]
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[4.9, 562] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF143SAQ.bed.gz | 198.76 KB | 709216121defd3e04015b73fb01fa720 |
| ENCFF143SAQ.bed.gz.dvc | 100.0 B | 450a721b0feccdc3e49a7079df2aa843 |
| ENCFF143SAQ.tabix.bed.gz | 133.5 KB | 1d75d4537ec8ec226305639fdec5dbf7 |
| ENCFF143SAQ.tabix.bed.gz.dvc | 106.0 B | 23a92ad49c11e60288378a2207758b2e |
| ENCFF143SAQ.tabix.bed.gz.tbi | 84.1 KB | c4915a180b603725f70cc44d3793763a |
| ENCFF143SAQ.tabix.bed.gz.tbi.dvc | 109.0 B | 36bc2f7853c56e436a46b3ccd69c3f94 |
| genomic_resource.yaml | 3.88 KB | e9ee89228dfee0994825c6bcf3b8bb56 |
| genomic_resource_original.yaml | 3.79 KB | d21b71c06b2cb1ab29d658ca4166fef1 |
| statistics/ |