TF_ChIP-seq_ENCSR000ECZ
TF_ChIP-seq ENCSR000ECZ [biosample_summary="Homo sapiens HeLa-S3" and target="GTF2F1"]
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| Id: | TF_ChIP-seq/ENCSR000ECZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECZ [biosamplesummary="Homo sapiens HeLa-S3" and target="GTF2F1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN681AHY|/analyses/ENCAN681AHY/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF394JHN|/files/ENCFF394JHN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF818YBT|/files/ENCFF818YBT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13243224 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GTF2F1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF929BHR|/files/ENCFF929BHR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14629895 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GTF2F1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF486EDR|/files/ENCFF486EDR/}, {ENCFF394JHN|/files/ENCFF394JHN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 2.23. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF167PPG|/files/ENCFF167PPG/}, {ENCFF341ZYY|/files/ENCFF341ZYY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 2.23. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECZ | float |
TF_ChIP-seq_ENCSR000ECZ |
TF_ChIP-seq ENCSR000ECZ [biosample_summary="Homo sapiens HeLa-S3" and target="GTF2F1"]
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[5.2, 460] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF394JHN.bed.gz | 311.33 KB | 7173d34dedd7f967349bd3a15a03b074 |
| ENCFF394JHN.bed.gz.dvc | 100.0 B | 4fe92f6ebcf1c08c8d523dd7ff2f0bc9 |
| ENCFF394JHN.tabix.bed.gz | 224.71 KB | e6f2e1a5a11afe26e0d4d2d0576558a3 |
| ENCFF394JHN.tabix.bed.gz.dvc | 106.0 B | 2bb3d0c3b6e62e191c003271ebdfa88a |
| ENCFF394JHN.tabix.bed.gz.tbi | 105.47 KB | de9718661aa2a34cc46d3315d4f53f55 |
| ENCFF394JHN.tabix.bed.gz.tbi.dvc | 110.0 B | dc93bf482950bddf541b095ebf9d96b7 |
| genomic_resource.yaml | 3.67 KB | ecb6d43fa7b7ed08df480b5046c11ca2 |
| genomic_resource_original.yaml | 3.57 KB | ef409de6bba34f632f028e0b69f06f2b |
| statistics/ |