TF_ChIP-seq_ENCSR000ECY
TF_ChIP-seq ENCSR000ECY [biosample_summary="Homo sapiens HeLa-S3" and target="PRDM1"]
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| Id: | TF_ChIP-seq/ENCSR000ECY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000ECY [biosamplesummary="Homo sapiens HeLa-S3" and target="PRDM1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN161MYB|/analyses/ENCAN161MYB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN161MYB|/analyses/ENCAN161MYB/} has in progress subobject document {f3888aa1-7579-4751-8684-98e5b8384cb3|/documents/f3888aa1-7579-4751-8684-98e5b8384cb3/} audit_warning: Processed alignments file {ENCFF080PDB|/files/ENCFF080PDB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14403882 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting PRDM1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF042FSB|/files/ENCFF042FSB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15413372 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting PRDM1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF080PDB|/files/ENCFF080PDB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF080PDB|/files/ENCFF080PDB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000ECY | float |
TF_ChIP-seq_ENCSR000ECY |
TF_ChIP-seq ENCSR000ECY [biosample_summary="Homo sapiens HeLa-S3" and target="PRDM1"]
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[4.53, 554] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF721NYV.bed.gz | 92.21 KB | fde764b125a6df4035e121b055231154 |
| ENCFF721NYV.bed.gz.dvc | 99.0 B | 99d7e3cbfc5e7335466d1dfab9d6328f |
| ENCFF721NYV.tabix.bed.gz | 61.61 KB | 5a631d8fa540fb53e94a2f5a1a80ce73 |
| ENCFF721NYV.tabix.bed.gz.dvc | 105.0 B | b52f198be5e58d7e7c67231d2272451d |
| ENCFF721NYV.tabix.bed.gz.tbi | 49.54 KB | 1c6368542e4a602b6c20fdf7bf3c4fe6 |
| ENCFF721NYV.tabix.bed.gz.tbi.dvc | 109.0 B | c6bd34f6b4d791e452d27a2780195bde |
| genomic_resource.yaml | 3.88 KB | 2a03931962c19407f56e5913a264a57c |
| genomic_resource_original.yaml | 3.79 KB | a82e8f76ba6cfb0626d297f78c8523aa |
| statistics/ |